FastQCFastQC Report
Wed 31 May 2023
EGAF00007931019

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931019
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32140146
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGCTG958520529.82315326134486No Hit
GTAGCACA759136923.61958467768006No Hit
CGTTTGAT736421122.912811285922597No Hit
TCCAATGC714409622.227951298043262No Hit
AAGCGCTA461750.1436676734449184No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)