FastQCFastQC Report
Wed 31 May 2023
EGAF00007931022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31846782
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGCTG947524329.75259164332522No Hit
GTAGCACA748190623.49344432979131No Hit
CGTTTGAT728998622.89080887356217No Hit
TCCAATGC706798422.19371489401975No Hit
AAGCGCTA455090.14289983835729464No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)