FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007931046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32406569
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATGGAG897192827.685522648201356No Hit
GTTGCAGC838718025.881110709375005No Hit
TGGAATTA763758423.568011781808806No Hit
ACCCTCCT689890721.288606640215445No Hit
ACCCTCCA519190.1602113448048141No Hit
GTTGCCGC347660.1072807183012802No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)