FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007931061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39999174
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATCACC1025907625.648219635735476No Hit
GATCTTGA993375024.834887840433908No Hit
ACGGACAT978628224.46621022724119No Hit
TTCAGGTG950324423.7586006151027No Hit
CGATCACA772190.19305148651319648No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)