FastQCFastQC Report
Wed 31 May 2023
EGAF00007931064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39497829
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATCACC1014499225.684935746721678No Hit
GATCTTGA977879624.757806308797377No Hit
ACGGACAT962633824.371815473706164No Hit
TTCAGGTG937589223.737740117311258No Hit
CGATCACA776520.19659814720449573No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)