FastQCFastQC Report
Wed 31 May 2023
EGAF00007931076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37673699
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGTCGC1359339636.08192548334582No Hit
CCCAATAG986773726.192641715378144No Hit
TATCGATA784941420.835262287358617No Hit
GTGTCGCT588411715.618633572455945No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)