FastQCFastQC Report
Wed 31 May 2023
EGAF00007931079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46689516
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGTCGG1347274928.856047683167247No Hit
GTATGTCA1223524326.205546872664094No Hit
TGTCAGAC1037355622.218169920630576No Hit
ACGACATT970178520.779365114857907No Hit
CACGTCGA919130.19686004027113924No Hit
ACGACATA582800.12482459659680345No Hit
ACGCCATT544750.11667501543601352No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)