FastQCFastQC Report
Wed 31 May 2023
EGAF00007931085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46471993
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGTCGG1341416328.865047814928012No Hit
GTATGTCA1217580326.20030305134535No Hit
TGTCAGAC1031981422.20652340001859No Hit
ACGACATT965662820.779457425034472No Hit
CACGTCGA913830.196641017741589No Hit
ACGACATA589390.12682692562808745No Hit
ACGCCATT517510.11135954509202993No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)