FastQCFastQC Report
Thu 9 May 2024
EGAF00007931088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45692763
Total Bases365.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGTCGG1316060728.802388246909032No Hit
GTATGTCA1194226726.136014142983647No Hit
TGTCAGAC1013017522.170195748503982No Hit
ACGACATT946899620.723185419975586No Hit
CACGTCGA897260.19636807693157013No Hit
ACGCCATT627610.13735435521813377No Hit
ACGACATA605730.13256585074533575No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)