FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007931091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46255379
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCCTTA1226023726.505537874849104No Hit
GCCGAGAT1182591925.566581132110063No Hit
TAATGACC1174688725.395721003604795No Hit
CGTATCGG944780720.42531529143886No Hit
TAATGCCC1242970.26871901752226485No Hit
CGTATCGA952450.20591118710755782No Hit
TAATGACA814570.17610276201606737No Hit
ATGCCTAA774980.16754375745143066Illumina PCR Primer Index 3 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)