FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007931103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47916676
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCCGA1410530629.437154613980322No Hit
CCAAGATG1149794823.99571289126984No Hit
GTTTATCT1138573323.761525110798587No Hit
TACGTGAC1005114920.976306870701965RNA PCR Primer, Index 17 (100% over 8bp)
AGGCCCGC637190.13297875670674653No Hit
GTTTATCA626570.1307624093123655No Hit
CCAAGATA505450.10548519684462253No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)