FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007931106

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931106
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46706998
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCCGA1374400229.42600164540654No Hit
CCAAGATG1120375023.9873048574006No Hit
GTTTATCT1103849323.633488497804976No Hit
TACGTGAC971003320.78924661353744RNA PCR Primer, Index 17 (100% over 8bp)
AGGCCCGC883070.1890658868720272No Hit
GTTTATCA620950.13294581681314652No Hit
CCAAGATA494310.10583210678622507No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)