FastQCFastQC Report
Wed 31 May 2023
EGAF00007931109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47728833
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCCGA1404716929.43120147102696No Hit
CCAAGATG1144893823.987466863059485No Hit
GTTTATCT1135231223.785019005178693No Hit
TACGTGAC1001133020.97543428308838RNA PCR Primer, Index 17 (100% over 8bp)
GTTTATCA627250.1314195132321798No Hit
AGGCCCGC597360.12515705129434027No Hit
CCAAGATA506180.10605329487104785No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)