FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007931112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46876808
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCCGA1377090529.37679758399932No Hit
CCAAGATG1126071024.021921458474733No Hit
GTTTATCT1112688023.736428470129624No Hit
TACGTGAC974409920.786609446615905RNA PCR Primer, Index 17 (100% over 8bp)
AGGCCCGC847520.18079729319453663No Hit
GTTTATCA621540.13259008591199298No Hit
CCAAGATA498130.10626363467410153No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)