FastQCFastQC Report
Wed 31 May 2023
EGAF00007931124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49574595
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGGAAG1332356926.87579999392834No Hit
CAGCATCA1311031426.445630065157367No Hit
GTAATCTT1183608923.875311538097286No Hit
AGTTCGGC1050997821.20033053220102No Hit
GTAATCTA846230.17069831836245963No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)