FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007931130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44593133
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTCTTC1165541826.137248531068675No Hit
CCTGTGCG1115596225.017219579525847No Hit
GGACACGT1051745523.585369074651023No Hit
ATGAGAAA1048922823.52207009092633No Hit
GGCCACGT609980.13678787718279403TruSeq Adapter, Index 20 (100% over 8bp)
TACTCTTA530220.11890171520354939No Hit
CCTGTGCA453150.10161878511653352No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)