FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007931133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44610742
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTCTTC1169221626.20941835040538No Hit
CCTGTGCG1118758125.07822219141748No Hit
GGACACGT1057826123.712362820595988No Hit
ATGAGAAA1051414023.568628381029843No Hit
TACTCTTA517500.1160034504693959No Hit
CCTGTGCA453540.10166609647514942No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)