FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007931136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44665272
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTCTTC1170219326.1997576103421No Hit
CCTGTGCG1118729925.046973854765735No Hit
GGACACGT1053384023.583960263356282No Hit
ATGAGAAA1050518823.519811991741594No Hit
GGCCACGT557980.12492479615930695TruSeq Adapter, Index 20 (100% over 8bp)
TACTCTTA526310.11783427625829751No Hit
CCTGTGCA452480.10130465566178573No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)