FastQCFastQC Report
Wed 31 May 2023
EGAF00007931139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40910496
Sequences flagged as poor quality0
Sequence length8
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCGGG1447277835.3766867065117No Hit
CAACGCCT1207523129.516217549647894No Hit
ACCATAAC1180565128.857266849074627No Hit
GTGTATTA18225654.455005874287127No Hit
TGTGCGGA942590.23040297531469675No Hit
CAACGCCA839260.20514539838382795No Hit
CCCATAAC612020.14959975063612038No Hit
CACCGCCT466620.11405874912882993No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)