FastQCFastQC Report
Wed 31 May 2023
EGAF00007931142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40270191
Sequences flagged as poor quality0
Sequence length8
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCGGG1420134635.265156800473086No Hit
CAACGCCT1183886829.39858914500803No Hit
ACCATAAC1156559928.72000035957118No Hit
GTGTATTA17790034.417667152360911No Hit
TGTGCGGA924230.2295072302984607No Hit
CAACGCCA871480.21640821122502252No Hit
CCCATAAC762130.18925413092776244No Hit
CACCGCCT607040.15074177323867174No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)