FastQCFastQC Report
Wed 31 May 2023
EGAF00007931145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40178906
Sequences flagged as poor quality0
Sequence length8
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCGGG1420536535.35528070376033No Hit
CAACGCCT1186653429.53423868733509No Hit
ACCATAAC1158873028.84282115595681No Hit
GTGTATTA17902304.455646452892471No Hit
TGTGCGGA926800.23066830142164646No Hit
CAACGCCA838650.20872892855768646No Hit
CCCATAAC605640.15073581147281612No Hit
CACCGCCT432840.10772816960222859No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)