FastQCFastQC Report
Wed 8 May 2024
EGAF00007931148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40260223
Total Bases322 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCGGG1418448535.23200802936437No Hit
CAACGCCT1187892129.50535321177928No Hit
ACCATAAC1156620728.72862129948957No Hit
GTGTATTA17826474.427812036709286No Hit
TGTGCGGA927200.23030175466241207No Hit
CAACGCCA869740.21602960321407064No Hit
CCCATAAC765770.19020510641483532No Hit
CACCGCCT576270.14313631596129014No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)