FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007931151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43537166
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCTCTC1140653326.19953030475158No Hit
CGGAGGGA1110721725.512034935852277No Hit
GTCTCTCG1107635125.441139186689366No Hit
TCAGAAAT920642621.14613064157644No Hit
GTCTCTCA825560.18962189684096573No Hit
CGGAGGAA730630.1678175377791012No Hit
AATCTCTA715660.16437909624158817No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)