FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007931154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42556335
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCTCTC1112367026.138693569359294No Hit
CGGAGGGA1081158425.405345643603944No Hit
GTCTCTCG1079153525.358233973860766No Hit
TCAGAAAT899096721.12721173005147No Hit
GTCTCTCA810650.1904886781251252No Hit
AATCTCTA715680.16817237668610324No Hit
CGGAGGAA702140.1649907117236482No Hit
TCAGAAAA433300.10181797845138685No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)