FastQCFastQC Report
Wed 31 May 2023
EGAF00007931160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42761000
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCTCTC1118172926.1493627370735No Hit
CGGAGGGA1085129625.37661888169126No Hit
GTCTCTCG1083498925.338483665021865No Hit
TCAGAAAT904039921.141692196160054No Hit
GTCTCTCA811930.18987628914197516No Hit
AATCTCTA722670.16900212810738757No Hit
CGGAGGAA710010.16604148640115993No Hit
TCAGAAAA458920.10732209256097845No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)