FastQCFastQC Report
Wed 31 May 2023
EGAF00007931164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470203
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44360.9434223090877769No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22530.479154748055627No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17500.3721796755869273No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11100.23606825137227963No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10120.2152261895394117No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9390.19970098021492846No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9260.1969362169105684No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8490.1805603111847436No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8270.17588148097736508No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8160.17354206587367585No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7640.16248301265623571No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6640.141215602622697No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6400.13611142421464772No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5710.12143691129150602No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5500.11697075518446289No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5190.11037785807406589No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)