FastQCFastQC Report
Wed 31 May 2023
EGAF00007931168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464710
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36170.7783348755137612No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25420.5470078113231908No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22890.49256525575089843No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18090.38927503174022504No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17200.3701233027049127No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12300.2646811990273504No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11440.24617503389210474No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11260.2423016504917045No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10560.2272384928234813No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9570.20593488412127994No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9490.20421338038776873No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9380.2018463127541908No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8510.18312495965225625No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7730.16634029825052182No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7370.15859353144972133No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6870.14783413311527618No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6810.14654300531514278No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6630.14266962191474253No Hit
GGTCAAGACGTTGACGGCGTGGTCAGCCTGC6350.13664435884745324No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT6240.13427729121387533No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6190.13320135138043082No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5560.11964450947902992No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5330.11469518624518517No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5270.11340405844505175No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5130.11039142691140712No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4910.10565729164425125No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA4710.10135353231047321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)