FastQCFastQC Report
Wed 31 May 2023
EGAF00007931173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467868
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC36010.7696615284652936No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT34440.7361050552719999No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG30920.6608701599596468No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT29810.6371455196764899No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG26560.5676814828113912No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC25610.5473766104969778No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG18390.3930595809074355No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT18280.3907084904289244No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG17690.3780980960441834No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG16750.3580069592278164No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC16610.355014662255166No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT14340.30649670419862013No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA13810.2951687228021579No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA13290.2840544769037421No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10950.234040370360871No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT9040.1932168902339976No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8870.18958338676720785No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8160.17440816640590934No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7510.16051535903288963No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG7070.15111099711884549No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6800.14534013867159112No Hit
GTCGATGCAAGCACCGGAGTTGAAGGTCTGGGTGGCGCTAGAAC6270.13401215727512888No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5900.12610394384740994No Hit
GTCAATGCACGCGCCAGAGTTGAAGGTCTGAGTAGCAGAGCTGC5880.12567647285131706No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5790.12375285336889892No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT5210.11135619448220438No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5200.11114245898415792No Hit
GTTCTGGCCCGCGCGGGTGCCAGCATTCCACTGGATAGTACGGG4730.10109689057597443No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)