FastQCFastQC Report
Sun 21 May 2023
EGAF00007931174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467868
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA75641.616695307223405No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43290.9252609710431147No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA37410.7995844981917978No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC33950.7256320158677234No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA33620.7185787444321903No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG32020.6843810647447571No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG31230.6674959603990869No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29650.6337257517077467No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC20350.4349517385245411No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18630.39818923286055036No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16680.3565108107414912No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA15250.32594663452084777No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT13960.29837475527285473No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11690.24985679721630888No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8990.19214821274376534No Hit
GAATGCGACAACTATCGCCAGGAATACGATA8680.18552241230432515No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8340.1782554053707456No Hit
CAGTCCATTGTAAACCGTACTGACCTGGATC7200.15388955859344944No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG6740.1440577256833124No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC6730.14384399018526592No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5820.1243940598630383No Hit
CCGCGTGTCCTGAGCAACTCCGGTTGGGGTC5630.1203330854001556No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC5250.11221113647439021No Hit
TACGCCGACGGTACCATTAGCTCTATCCAGC5200.11114245898415792No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5170.11050125249001855No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4740.10131062607402089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)