FastQCFastQC Report
Sun 21 May 2023
EGAF00007931176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473251
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA77791.643736621792664No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39840.8418365729813566No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA37590.7942930918265361No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC34640.731958305423549No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA34110.7207591743070803No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG32570.6882183027611141No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG31290.6611713445930384No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30070.6353922125890912No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC20810.43972437459191843No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18930.39999915478255726No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17170.36280958730145313No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA14780.31230784509699927No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT13230.2795556691903451No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11460.24215479734855289No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9800.20707827347432967No Hit
GAATGCGACAACTATCGCCAGGAATACGATA8950.1891174028158419No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8610.1819330545524468No Hit
CAGTCCATTGTAAACCGTACTGACCTGGATC6960.14706783503891172No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC6660.14072870421826894No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG6390.13502348647969048No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5990.12657131205216682No Hit
CCGCGTGTCCTGAGCAACTCCGGTTGGGGTC5870.12403565972390972No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5600.11833044198533126No Hit
TACGCCGACGGTACCATTAGCTCTATCCAGC5130.10839913703299094No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC4950.1045956585406053No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4860.10269391929441248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)