FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007931178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466406
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41560.8910691543419252No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA18900.40522634786001893No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16600.3559130885966304No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12570.26950768214817133No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12490.26779243834770566No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11550.24763832369223382No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10960.23498840066379936No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9580.20540044510576622No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8760.1878191961509929No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7930.17002354172116138No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7310.1567304022675523No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG7220.1548007529920284No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6700.14365166828900144No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6190.13271698906103266No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5910.12671363575940275No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5830.12499839195893707No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5790.1241407700587042No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5170.11084763060509513No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5000.10720273752910556No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA4870.1044154663533488No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4850.10398665540323236No Hit

[OK]Adapter Content

Adapter graph