FastQCFastQC Report
Wed 31 May 2023
EGAF00007931179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528903
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG40170.7594965428443401No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA37510.70920376704235No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA34030.6434072032111748No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG29330.5545440279219441No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG22140.4186022767879933No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21400.4046110534445825No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT20800.3932668183012764No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC17390.3287937485701537No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT16120.3047817841834892No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG15650.2958954666545661No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG14840.280580749211103No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA14590.2758539845680588No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG14490.2739632787108411No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA13430.2539217966243338No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT13070.24711525553835012No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13060.24692618495262836No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT13020.24616990260974128No Hit
CTGTTCCGGGATCTGCGGCAGCTGCTGACAGCACTGTTGCTGCA12670.23955243210947944No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG12240.23142239692344344No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11680.22083444412302444No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT11250.21270440893698844No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT11170.21119184425121432No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT11090.2096792795654402No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10830.2047634443366742No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG10740.20306180906517832No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10490.19833504442213412No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10200.19285199743620285No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG10040.18982686806465457No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG9780.1849110328358886No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9530.18018426819284444No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT9460.17886077409279205No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT9200.17394493886402612No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9030.17073073890675605No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG8260.15617230380617997No Hit
GGTACCCAGCTGATTGCGCTCACGTTCCAGCGCTTCAATGTGAC8120.1535253156060752No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT8060.1523908920917446No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7990.15106739799169225No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG7720.1459624921772045No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG7600.1436936451485433No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7540.1425592216342127No Hit
CTGCGGCAGCTGTTGGCAGCACTGCTGTTGCATAACGTGGCAAG7220.13650896289111614No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7180.13575268054822906No Hit
TTGCTGCGGAATCTGTGGCAGTTGCTGACAGCATTGCTGCTGCA7110.1344291864481767No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6780.12818985711935835No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6740.1274335747764713No Hit
CGGTGCCTGTGGCGGAGGCGGTTCCTGATAGCCCTGGTATGGTG6700.12667729243358422No Hit
CAGCTGCTGACAGCATTGCTGCTGCATAACGTGACAGGAAGACT6500.12289588071914888No Hit
CACATCTGCGCTCGCAGAGATGCCAGCGAAGTAACCGGTTGCAT6450.12195052779054004No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT6440.12176145720481828No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6380.12062703369048768No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6300.11911446900471352No Hit
TTCCTCACCGGCAGCTTTTGCCTGTTCTTCAATGTTAGCAACAA6230.11779097490466116No Hit
GTGGCAGGAGCTCTGCTGCAGCATCTGGGAGCGTGCCAGACGCT6170.11665655139033056No Hit
CTGCTGCAGTACGTGGCAAGAAGACTGCTGCAGCATCTGGCTAC6080.11495491611883464No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT6060.11457677494739112No Hit
CTGCGGCAGCTGCTGGCAGCACTGCTGCTGCATGACGTGGCAAG6050.11438770436166934No Hit
CAGACGAGAACGTTTGGACAGAGAACGAGTGTAGGAAACGTTGC5970.1128751396758952No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5890.11136257499012106No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5840.11041722206151222No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5810.10985001030434692No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5780.1092827985471816No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5710.10795930444712926No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5640.10663581034707688No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5610.10606859858991156No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5610.10606859858991156No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5590.10569045741846803No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5560.10512324566130274No Hit
CAGGGTCGGAATCTGATGACGGGTTTTGCATGCAACACCGTTCT5530.10455603390413742No Hit
TTCTTCGATGGCTTTGATAACGCTGAAGTCGGTAACGATAGCAC5520.10436696331841566No Hit
CAGCGGACGCAGATTACCGATTTCACCGTTTTCACCCTGGTCCT5410.10228718687547622No Hit
GTCATCCCAAGAACCGTTGCGTTCGGTATATTCAGTCAGCGGTG5400.10209811628975446No Hit
TTTAACGTTAGAGGTGAATACGCCACCGAAGCGTGGACCCAGAC5350.10115276336114562No Hit
GTGCTGGGAACGCGGGGTCCAAGGGCCAGCGTAGCCCGGATAGC5340.10096369277542384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)