FastQCFastQC Report
Wed 31 May 2023
EGAF00007931183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503437
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14270.28345155401768246No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12880.2558413465835845No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT8350.16585987919044487No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8310.1650653408470176No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6420.12752340412007857No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5940.1179889439989512No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5810.11540669438281255No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5810.11540669438281255No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5700.11322171393838751No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5430.10785858012025337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)