FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501506
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42470.8468492899387047No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT34330.6845381710288612No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28410.5664937209126112No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA19050.37985587410718913No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10880.21694655697040516No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10750.2143543646536632No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9620.191822231438906No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC8930.17806367221927555No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8440.1682931011792481No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8240.16430511299964506No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6670.13299940578976124No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6660.13280000638078107No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6600.13160360992690018No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5820.11605045602644834No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5310.10588108616846059No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5220.10408649148763924No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5130.10229189680681786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)