FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490594
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA30430.6202684908498677No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24530.5000061150360583No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23290.47473063266163057No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14410.2937255653350836No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12710.25907369433788424No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12680.25846219073205134No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9710.1979233337545914No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6900.14064582934157369No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6640.13534613142435495No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT6150.12535823919575045No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5930.12087387941964231No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5580.11373967068492481No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)