FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496263
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA32230.6494540193405512No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23470.4729347140528309No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22580.4550006750452885No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14180.2857355877830908No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12880.25953980046870306No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12070.2432178099112769No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10060.20271509260210815No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7320.1475024331856294No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT6240.12573977910906112No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6100.12291869432135784No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5680.11445543995824795No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5640.11364941573318986No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG5010.10095453418852503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)