FastQCFastQC Report
Wed 31 May 2023
EGAF00007931191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468819
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25730.5488258794972046No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20610.43961528862951377No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT19980.4261772667063408No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18400.39247556093076436No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14350.3060882771389385No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13200.28155855458076573No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT10740.2290862784998048No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10130.21607486044720883No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8670.18493277789509385No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA8550.18237315467163234No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8120.17320117145422861No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8090.17256126564836322No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7710.1644557921074018No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7560.16125626307807492No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7270.1550705069547096No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7180.15315078953711347No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6690.14269899470797898No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6550.13971276761394058No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6290.13416691729644062No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6020.12840776504365223No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5800.12371512246730615No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4920.10494455216192176No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4900.10451794829134484No Hit
GTAGTTACCCGGCAGGCATTCGAAACGCAGGGTCGGGCTAGACT4820.10281153280903717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)