FastQCFastQC Report
Sun 21 May 2023
EGAF00007931192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468819
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA43520.928290022375373No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25970.5539451259441277No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG20610.43961528862951377No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20420.43556255185903303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17490.37306508481951456No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14710.313767146809323No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC11290.24081788494067008No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9740.20775608497095896No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9400.20050381917115132No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9070.19346485530663218No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9060.19325155337134375No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8780.1872790991832669No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA8560.1825864566069208No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8470.18066673918932466No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8330.17768051209528624No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7910.16872183081317096No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7860.16765532113672865No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG7470.15933654566047878No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7400.15784343211345955No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6570.14013937148451747No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6410.13672654051990213No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6130.13075408633182528No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6120.13054078439653682No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5120.10921059086769094No Hit
TGTCCGCAGCCGCGCGGCGTATCCGTTCGTA5040.10750417538538327No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4890.10430464635605638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)