FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477369
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28610.599326726285117No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18090.3789521313700722No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17910.37518146339624064No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14260.2987206961491006No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12970.2716975756699744No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12840.26897431546665157No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12020.2517968280303078No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11700.24509341829905168No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10030.2101099987640588No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9330.19544628997693608No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8980.1881144355833747No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8910.18664806470466244No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7460.15627323935990817No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7450.1560637578058064No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7350.15396894226478888No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6260.13113545286769773No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6220.13029752665129074No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4910.102855443063961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)