FastQCFastQC Report
Wed 31 May 2023
EGAF00007931196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464951
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43080.9265492492757302No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25610.5508107305931162No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25250.543067979206411No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20240.43531468907476273No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18380.3953104735767855No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17830.38348127006931915No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16040.34498258956320127No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14190.3051934504926326No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13300.2860516484532779No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13270.2854064191710525No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11640.25034896150347025No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11340.24389666868121587No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11080.23830468156859538No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10440.22453979021445272No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10370.22303425522259335No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10250.2204533380936916No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9400.20217184176397085No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8910.19163309682095533No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8710.18733156827278574No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8640.18582603328092637No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7890.16969530122529042No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7610.16367316125785297No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7400.1591565562822749No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6940.14926304062148485No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6940.14926304062148485No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6880.14797258205703395No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6760.1453916649281322No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6580.14152028923477958No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6560.14109013637996262No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6540.14065998352514567No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6360.13678860783179303No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6310.13571322569475064No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6070.1305513914369471No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5920.12732524502581993No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC5620.12087295220356553No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5500.11829203507466378No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5400.11614127080057897No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5330.11463573580871964No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5050.1086135958412822No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4950.1064628315671974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)