FastQCFastQC Report
Sun 21 May 2023
EGAF00007931201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470503
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC30240.6427164120101253No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20430.43421614739969777No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20420.43400360890366263No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20280.4310280699591713No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19760.4199760681653465No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18360.3902206787204332No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14790.3143444356359046No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA13050.27736273732579814No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11520.24484434743242872No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10090.21445134249941022No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9900.21041311107474342No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9260.19681064732849735No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8980.19085956943951474No Hit
GGCACCAACGAACGCACGCACAGCGGATGCGGTTACGTCCTGCG8930.18979687695933925No Hit
AGAGTTACCGTTGCGTACGCCTTTTGCGGAACGGTTACGCAGCA7880.16748033487565434No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7370.15664087157786455No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7180.15260264015319774No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT6490.13793748392677624No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6460.13729986843867095No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6170.13113625205365323No Hit
ACGACCGGAGTCATCACCGGAAGTAGAGCTGTCACGCTGGCGCG5840.1241224816844951No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5760.12242217371621436No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5510.11710871131533698No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5150.1094573254580736No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4990.10605670952151208No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4800.10201847809684528No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)