FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470503
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC39450.8384643668584473No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG22670.48182477051155886No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21510.457170304971488No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21490.4567452279794178No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21390.4546198430190668No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20650.4388919943124699No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20430.43421614739969777No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16260.3455875945530634No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG14450.3071181267707114No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12170.2586593496747098No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12160.25844681117867474No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9900.21041311107474342No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9520.2023366482254098No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9510.20212410972937472No Hit
ATGATGGCTCGTCGCACCGTTGATTTCAAAA9160.19468526236814643No Hit
ATGGCATCCACCACCCCGATCACCATGGAAG8740.18575864553467247No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8690.184695953054497No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8080.17173110479635623No Hit
AAGCAGCGTGGCCCGATCCCAGAAGGTCTGG7890.16769287337168945No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG7450.1583411795461453No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6540.13900017640695173No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6330.13453686799021475No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6230.1324114830298638No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6120.13007355957347774No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5540.11774632680344227No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5210.11073255643428417No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5090.10818209448186303No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4870.10350624756909094No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4750.10095578561666982No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4740.10074324712063473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)