FastQCFastQC Report
Wed 31 May 2023
EGAF00007931203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445253
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27590.6196477059110214No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19610.44042375907630044No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19290.43323683388994566No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA18680.419536757753457No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18640.4186383921051627No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17280.3880939600631551No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14350.32228867632559466No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12630.28365895344893804No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10720.24076199374288326No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9830.2207733580683342No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9450.21223888440953792No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8850.19876339968512283No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8630.19382238861950396No Hit
GGCACCAACGAACGCACGCACAGCGGATGCGGTTACGTCCTGCG8520.1913518830866945No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7200.16170581669298129No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7190.1614812252809077No Hit
AGAGTTACCGTTGCGTACGCCTTTTGCGGAACGGTTACGCAGCA6720.1509254289134492No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT6550.14710737490819828No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6050.13587780430451898No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5720.1284662877060907No Hit
ACGACCGGAGTCATCACCGGAAGTAGAGCTGTCACGCTGGCGCG5480.12307609381632466No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4880.10960060909190955No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4870.10937601767983596No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4790.10757928638324726No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4700.10555796367458502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)