FastQCFastQC Report
Wed 31 May 2023
EGAF00007931204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445253
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38480.8642277536591556No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC35970.8078553092286858No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG21260.47748134206844195No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20590.4624337174595118No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20330.45659434074559857No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19280.4330122424778721No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19130.4296433712967684No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18880.4240285859949287No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15820.35530361390041165No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13860.311283697133989No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11510.25850471529669644No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10950.24592759622057572No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9390.21089133593709644No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9190.20639950769562473No Hit
ATGATGGCTCGTCGCACCGTTGATTTCAAAA8740.19629289415231338No Hit
ATGGCATCCACCACCCCGATCACCATGGAAG8310.18663546343314924No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8090.18169445236753037No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG7360.16529927928615865No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7220.16215499951712847No Hit
AAGCAGCGTGGCCCGATCCCAGAAGGTCTGG6640.1491286976168605No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5790.1300384275906058No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5400.12127936251973598No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5330.11970722263522086No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5100.11454162015752843No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5000.11229570603679256No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4810.10802846920739445No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4750.10668092073495294No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4580.10286286672970199No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4480.10061695260896614No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4480.10061695260896614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)