FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences362597
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15700.4329875867698851No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14340.39548038180128353No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10850.29923027493332816No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9580.26420516441117825No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7820.21566642856945864No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6140.16933399890236267No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5840.16106035074752412No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5840.16106035074752412No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4710.1298962760309655No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4520.12465629886623442No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4380.12079526306064307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)