FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences362597
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50871.402934938788793No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28300.7804808092731048No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13870.38251833302536975No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11420.3149502064275215No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10250.28268297862365105No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9520.26255043478021056No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7510.2071169921427921No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7240.19967070880343743No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5690.1569235266701048No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4800.13237837047741707No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4750.1309994291182773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)