FastQCFastQC Report
Sun 21 May 2023
EGAF00007931209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405917
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16010.3944156071315072No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15460.38086603911637107No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11450.2820773704969243No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG10170.25054383038897116No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7990.19683826989261352No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7330.1805787882744502No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6740.16604379713094056No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6660.1640729508741935No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5290.13032220872739994No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5160.12711958356018596No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4650.11455543867342338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)