FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405917
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA30550.7526169142952869No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15540.38283688537311816No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13390.32987039222304065No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12510.3081910833988229No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10750.2648324657503874No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10240.25226832086362483No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9160.2256618963975394No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8420.207431568522629No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6870.16924642229815454No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5750.14165457470369558No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5330.13130763185577346No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4070.10026680331200713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)