FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398647
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29110.7302199690452957No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19200.48162911046615176No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15130.3795337729871289No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14050.3524421355234079No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12940.3245979525745835No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11520.28897746627969106No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11400.2859672843392776No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11090.27819098099320955No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11050.2771875870130717No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10540.26439431376631456No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9840.24683491911390276No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9690.24307219168838595No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8660.2172347966998372No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8350.20945849335376912No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8320.20870594786866575No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8030.2014313415126666No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8010.2009296445225977No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7600.19064485622618507No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5810.14574297561501778No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5520.13846836925901862No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5370.1347056418335018No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5330.133702247853364No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4920.12341745955695138No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4820.12090897460660685No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4540.11388521674564214No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4440.11137673179529758No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4360.10936994383502197No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4280.10736315587474632No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4090.1025970344690917No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC3990.10008854951874717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)