FastQCFastQC Report
Sun 21 May 2023
EGAF00007931213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364611
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14160.38835910052082906No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12580.3450252460841829No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10930.29977153733705236No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT10370.28441270285317777No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9810.2690538683693032No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9740.26713401405881887No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9670.2652141597483345No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9420.2583575372108905No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7910.21694353708472863No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7820.2144751529712488No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7170.19664793437389438No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6750.18512880851098842No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6450.1769008614660556No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6190.16976997402711383No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5790.1587993779672034No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5780.15852511306570563No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5620.15413687464174147No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5120.14042362956685345No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5110.14014936466535569No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4630.12698464939346318No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4510.12369347057549003No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4420.1212250864620102No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4180.11464272882606395No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4110.11272287451557961No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4080.11190007981108634No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4030.11052875530359753No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG3840.10531772217514009No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC3780.10367213276615353No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG3690.10120374865267368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)